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Engineered geminivirus replicons enable rapid in planta directed evolution | Science

By Eric November 16, 2025

In the realm of plant biotechnology, the ability to rapidly generate genetic variants with enhanced properties is crucial for advancing crop improvement and resilience. Traditional methods have often faced challenges when it comes to performing directed evolution directly within plant cells. However, recent advancements have introduced a promising solution: the development of a geminivirus replicon–assisted in planta directed evolution system. This innovative platform allows researchers to perform directed evolution within living plant cells, facilitating the rapid generation of genetic variants that can exhibit new traits or improved functionalities.

The geminivirus replicon system leverages the natural replication mechanisms of geminiviruses, which are known for their ability to efficiently replicate their genetic material within host plant cells. By harnessing this capability, scientists can introduce genetic modifications that can be rapidly tested and iterated upon in a plant’s natural environment. This approach not only accelerates the process of selecting for desirable traits but also enhances the scope of traits that can be targeted, including disease resistance, drought tolerance, and improved nutritional profiles. For instance, in recent experiments, researchers successfully demonstrated the utility of this system by generating variants of a key enzyme involved in plant metabolism, which resulted in enhanced growth and yield in test plants.

The implications of this technology are profound, particularly in the context of global food security and sustainable agriculture. As climate change and population growth continue to challenge traditional farming practices, the ability to quickly develop crops that can withstand adverse conditions is more critical than ever. The geminivirus replicon–assisted directed evolution system not only streamlines the process of plant breeding but also opens the door to more precise and targeted modifications, potentially leading to a new era of agricultural innovation. By enabling scientists to explore a broader range of genetic possibilities within plant cells, this approach promises to contribute significantly to the development of crops that are not only resilient but also capable of meeting the nutritional needs of a growing global population.

Directed evolution can rapidly generate genetic variants with new and enhanced properties, yet efficient platforms for performing such evolution directly in plant cells have been lacking. We developed geminivirus replicon–assisted in planta directed …

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