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Multiscale structure of chromatin condensates explains phase separation and material properties | Science

By Eric December 8, 2025

Recent advancements in the study of biomolecular condensates have shed light on the intricate structure and interaction networks of molecules within these specialized cellular compartments. A team of researchers employed cutting-edge techniques, including cryo-electron tomography and molecular dynamics simulations, to investigate phase-separated chromatin condensates. These condensates play a crucial role in various cellular processes, including gene expression and DNA repair, yet their molecular architecture has remained largely enigmatic. By combining experimental and computational approaches, the researchers were able to reveal the dynamic organization of chromatin within these condensates, offering new insights into their functional significance in cellular biology.

The study highlights the importance of phase separation in the formation of biomolecular condensates, where specific proteins and nucleic acids aggregate to form distinct, membrane-less structures. Through cryo-electron tomography, the researchers visualized the spatial arrangement of chromatin fibers, discovering that these structures are not merely random clusters but exhibit organized patterns that suggest a higher-order architecture. Additionally, molecular dynamics simulations provided a detailed view of the interactions between chromatin and associated proteins, illustrating how these interactions contribute to the stability and functionality of the condensates. For example, the simulations revealed that certain proteins act as scaffolds, facilitating the clustering of chromatin and enhancing its regulatory capabilities.

These findings have significant implications for our understanding of cellular organization and the mechanisms underlying gene regulation. By elucidating the structural framework of chromatin condensates, the research opens new avenues for exploring how disruptions in these processes can lead to diseases such as cancer and neurodegenerative disorders. The integration of advanced imaging techniques with computational modeling not only enhances our comprehension of biomolecular condensates but also sets a precedent for future studies aimed at unraveling the complexities of cellular organization. As scientists continue to explore the role of these condensates in health and disease, this research underscores the necessity of interdisciplinary approaches in the field of molecular biology.

https://www.youtube.com/watch?v=cGoHYCFk–E

The structure and interaction networks of molecules within biomolecular condensates are poorly understood. Using cryo–electron tomography and molecular dynamics simulations, we elucidated the structure of phase-separated chromatin condensates across …

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